1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acgaggtgtagggccaagcagctgcggcgcgggcacctgcgatgcccagacgcactgtagcctcacctggtttgcactttggccgcttaacctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG
species | Chlamydomonas reinhardtii |
transcript | EDP04425 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|49459183|gb|BP087096.1|BP087096
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|23366869|gb|BU654688.1|BU654688
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|9028232|gb|BE238272.1|BE238272
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|6544161|gb|AV389945.1|AV389945
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|22056000|gb|BQ812146.1|BQ812146
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|6544497|gb|AV390281.1|AV390281
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|14226588|gb|BG845420.1|BG845420
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|10772277|gb|AV623100.1|AV623100
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|14237451|gb|BG856267.1|BG856267
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCEST: gi|14227106|gb|BG845922.1|BG845922
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
EST: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAG GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
genomic: ATCGCCGCCAAGCTGGAGATCATGGAGCCCTGCTGCTCCGTTAAGGACAGgtgcggcgtg ... cctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCC
ccagacgcactgtagcctcacctggtttgcactttggccgcttaacctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG
gcttaac putative branch site (score: 3)
cctcctgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgaggtgtagggccaagcagctgcggcgcgggcacctgcgatgcccagacgcactgtagcctcacctggtttgcactttggccgcttaacctcctgcagGATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG