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ATTCGCGATCAAGTCGGCCGGGTGTTGAGTGCCTACGTTCGTTGTGCGAATGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtctttcggagaagcatgcgagcaggatgtggcattccgcaagcgccaggccacggcggccaacaggactcgaggccccgctatttcggtcttcct...
species | Chlamydomonas reinhardtii |
transcript | EDP04425 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|49459183|gb|BP087096.1|BP087096
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|22070937|gb|BQ820275.1|BQ820275
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|23366869|gb|BU654688.1|BU654688
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|9028232|gb|BE238272.1|BE238272
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|6544161|gb|AV389945.1|AV389945
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|6544497|gb|AV390281.1|AV390281
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|14226588|gb|BG845420.1|BG845420
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|10772277|gb|AV623100.1|AV623100
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCGEST: gi|14237451|gb|BG856267.1|BG856267
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGC-
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGATTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCEST: gi|14227106|gb|BG845922.1|BG845922
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAG-TTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGC
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCTEST: gi|49462430|gb|BP090343.1|BP090343
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
EST: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGG GTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
genomic: TGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtcttt ... cgcgaaacagGTTTCTCGAGTTGCCCTGGTCCCCAAGGCCGTCGCTGCTCCCGAGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCGCGATCAAGTCGGCCGGGTGTTGAGTGCCTACGTTCGTTGTGCGAATGCAGCTCCAGCAGAAGGCTCTGCGTCTGCAGTCGACATTTCCTACCCGGgtgagtctttcggagaagcatgcgagcaggatgtggcattccgcaagcgccaggccacggcggccaacaggactcgaggccccgctatttcggtcttcct
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcggtct