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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggcagccggcggccccgctgcagcgcccccccctgctaccgggcagccactcccgacgcttgcaagccgtagccgcatggctgcacatgagcgt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04425
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070936|gb|BQ820274.1|BQ820274
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|49459183|gb|BP087096.1|BP087096
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTC
EST: gi|23366869|gb|BU654688.1|BU654688
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|9028232|gb|BE238272.1|BE238272
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|10772916|gb|AV623739.1|AV623739
EST:     AGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: AGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|6544161|gb|AV389945.1|AV389945
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|22056000|gb|BQ812146.1|BQ812146
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|6544497|gb|AV390281.1|AV390281
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|14226588|gb|BG845420.1|BG845420
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|10772277|gb|AV623100.1|AV623100
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|14237451|gb|BG856267.1|BG856267
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
EST: gi|14227106|gb|BG845922.1|BG845922
EST:     ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAG                         ACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC
genomic: ACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggca ... gatggtgcagACTGTCCTGGTGGAGCCCACCTCGGGTAACACCGGCATCGGTCTGGCCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCGGCTACAGCATGATCTCGAGCGCGGAGAAGGAGGGCCTCATCACCCCGGGCAAGgtgagaggcagccggcggccccgctgcagcgcccccccctgctaccgggcagccactcccgacgcttgcaagccgtagccgcatggctgcacatgagcgt

- - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - -  AAGGAG