1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGGCGCCACCGCCACGTTCAGCAAGACCATGGCGCTGCGGCGGCTGCACTGGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggagcgagcgagcgggcgcagcggggtggcttccaccatcgtcatcttgtggaagaaacggaaggataagttaggggggattgcagtttccagc...
species | Chlamydomonas reinhardtii |
transcript | EDP03737 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|16437541|gb|BM002761.1|BM002761
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|14226285|gb|BG845101.1|BG845101
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|14226285|gb|BG845101.1|BG845101
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|16432958|gb|BI998184.1|BI998184
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|16432958|gb|BI998184.1|BI998184
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|8828203|gb|BE211837.1|BE211837
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|8828203|gb|BE211837.1|BE211837
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|16437542|gb|BM002762.1|BM002762
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|16437542|gb|BM002762.1|BM002762
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|14239075|gb|BG857891.1|BG857891
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|14239075|gb|BG857891.1|BG857891
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|14226284|gb|BG845100.1|BG845100
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG AEST: gi|14226284|gb|BG845100.1|BG845100
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
EST: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAG A
genomic: GGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggag ... gctccgcaga-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGCCACCGCCACGTTCAGCAAGACCATGGCGCTGCGGCGGCTGCACTGGCGCAACTCGCCGCTGGCTGAGGCACTGTATGCGCTCAACCTGTACAAGgtaagtggagcgagcgagcgggcgcagcggggtggcttccaccatcgtcatcttgtggaagaaacggaaggataagttaggggggattgcagtttccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggaa