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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaagagtcttgcgccgctagtgcacttgccgaacgcgcgcagcccaaatgacacggatttctctggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTCTGCCGAACCGCTGCGCCGATGGCTCCGTCTTGGGCGGAGACTCGCAGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP03737
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14239076|gb|BG857892.1|BG857892
EST:     AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCTGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: gi|15697028|gb|BI721333.1|BI721333
EST:     AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: gi|14226286|gb|BG845102.1|BG845102
EST:     GGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: GGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCA-GGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: gi|16432959|gb|BI998185.1|BI998185
EST:     AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: gi|49459489|gb|BP087402.1|BP087402
EST:     AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: gi|10781291|gb|AV637971.1|AV637971
EST:     AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: gi|49459454|gb|BP087367.1|BP087367
EST:     AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG                         GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcacttgccgaacgcgcgcagcccaaatgacacggatttctctggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTCTGCCGAACCGCTGCGCCGATGGCTCCGTCTTGGGCGGAGACTCGCAGC
                                      tttctctg  CT-rich tract