1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgcgtctttctgtgtcagcgtgactagcgccggtgttttgcgcacctttggccatgtgccccaacccactaacccgcacatgcacgtgcgcgcccaacagAGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCGCCACGTTCAGCAAGACCATGGCGCTGCGGCGGCTGCACTGGCGCAACTC
species | Chlamydomonas reinhardtii |
transcript | EDP03737 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCGCTCATGTTCCAGGTGTATGCGGCACACAAGGCGCTGGTGCTGTGGC AGTGCAAGCTCGACGCCGGGCTGGCGCGGATEST: gi|16437542|gb|BM002762.1|BM002762
genomic: GGCGCTCATGTTCCAGGTGTATGCGGCACACAAGGCGCTGGTGCTGTGGCgtgagtgccg ... cgcccaacagAGTGCAAGCTCGACGCCGGGCTGGCGCGGAT
EST: GGCGCTCATGTTCCAGATGTATGCGGCACACAAGGCGCTGGTGCTGTGGC AGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCGEST: gi|14239075|gb|BG857891.1|BG857891
genomic: GGCGCTCATGTTCCAGGTGTATGCGGCACACAAGGCGCTGGTGCTGTGGCgtgagtgccg ... cgcccaacagAGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCG
EST: GCGCTGGTGCTGTGGC AGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCG
genomic: GCGCTGGTGCTGTGGCgtgagtgccg ... cgcccaacagAGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCG
ctttggccatgtgccccaacccactaacccgcacatgcacgtgcgcgcccaacagAGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCGCCACGTTCAGCAAGACCATGGCGCTGCGGCGGCTGCACTGGCGCAACTC
cactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcgtctttctgtgtcagcgtgactagcgccggtgttttgcgcacctttggccatgtgccccaacccactaacccgcacatgcacgtgcgcgcccaacagAGTGCAAGCTCGACGCCGGGCTGGCGCGGATCGGCAGCGGCGGCGCCACCGCCACGTTCAGCAAGACCATGGCGCTGCGGCGGCTGCACTGGCGCAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - tctgtgt
- - - - - - - - - - - - - - - -ggtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca