1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGACCTCCGCGAACTGTGACCATCTCTAGCAGCTGCGACTCGAGATCATGAGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagagtcttgcgccgctagtgcacttgccgaacgcgcgcagcccaaatgacacggatttctctggttgaacag
species | Chlamydomonas reinhardtii |
transcript | EDP03737 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCTGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTEST: gi|15697028|gb|BI721333.1|BI721333
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTEST: gi|14226286|gb|BG845102.1|BG845102
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: GGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTEST: gi|16432959|gb|BI998185.1|BI998185
genomic: GGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCA-GGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTEST: gi|49459489|gb|BP087402.1|BP087402
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTEST: gi|10781291|gb|AV637971.1|AV637971
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGTEST: gi|49459454|gb|BP087367.1|BP087367
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
EST: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGG GCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
genomic: AGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagag ... ggttgaacagGCATAAACAATTACTACCCTTGCAACGATCATGTCGCGGAGCACCGCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACCTCCGCGAACTGTGACCATCTCTAGCAGCTGCGACTCGAGATCATGAGGCCTTGTCCGGCGGTGCACCGAAGAGTGCCGCCAGGGCCAGTTGCTGGgtgagaagagtcttgcgccgctagtgcacttgccgaacgcgcgcagcccaaatgacacggatttctctggttgaacag
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