1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttggactgaccgcggtggcaggcggatgcacgtgacccgcacccttccagtggtgcccccgccgcctgagtgtgccgtgattggtgggaacacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAACAGCTGCGGTTCGTCG
species | Chlamydomonas reinhardtii |
transcript | EDP03737 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCT GGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAACEST: gi|15697028|gb|BI721333.1|BI721333
genomic: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCTgtgagtgccg ... acacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAAC
EST: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCT GGGCGGAGAAGCGCTGGACGCTGTTCAGTACEST: gi|14226286|gb|BG845102.1|BG845102
genomic: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCTgtgagtgccg ... acacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTAC
EST: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCT GGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAACEST: gi|16437542|gb|BM002762.1|BM002762
genomic: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCTgtgagtgccg ... acacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAAC
EST: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCT GGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAACEST: gi|16432959|gb|BI998185.1|BI998185
genomic: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCTgtgagtgccg ... acacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAAC
EST: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCT GGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAAC
genomic: CTACGTGTTCTGGCAGGACAAGTTCATGCGCTGCTCCACCGACATCCCCTgtgagtgccg ... acacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggactgaccgcggtggcaggcggatgcacgtgacccgcacccttccagtggtgcccccgccgcctgagtgtgccgtgattggtgggaacacgcacagGGGCGGAGAAGCGCTGGACGCTGTTCAGTACGGTGTGGTACCTGGTGCAACAGCTGCGGTTCGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - atgcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgattg