1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gagaacgctcgttgcatgtttgtgtatgtgtgtgtgttaaaaaacgaaatgaaagcccgccttatctgacaccgcatggctctcaccgcgcacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGATCGCAAGCGCAGCACCCTGGCCATGTTTGACACGCAGATGGCCGTCGTCA
species | Chlamydomonas reinhardtii |
transcript | EDP03695 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAG GACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGATEST: gi|15695316|gb|BI719621.1|BI719621
genomic: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAGgtgcgtgtcg ... cacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGAT
EST: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAG GACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGATEST: gi|15695164|gb|BI719469.1|BI719469
genomic: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAGgtgcgtgtcg ... cacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGAT
EST: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAG GACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGATEST: gi|9027717|gb|BE237757.1|BE237757
genomic: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAGgtgcgtgtcg ... cacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGAT
EST: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAG GACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGC
genomic: GCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGCGAATCACGCTCGTGCAGgtgcgtgtcg ... cacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGC
gaaatgaaagcccgccttatctgacaccgcatggctctcaccgcgcacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGATCGCAAGCGCAGCACCCTGGCCATGTTTGACACGCAGATGGCCGTCGTCA
ctctcac putative branch site (score: 3)
cacccctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaacgctcgttgcatgtttgtgtatgtgtgtgtgttaaaaaacgaaatgaaagcccgccttatctgacaccgcatggctctcaccgcgcacccctcagGACGACCTGGCCCGCAAGGCGGAGGCGCAGCGGCAGCGCGACGAGGCGGATCGCAAGCGCAGCACCCTGGCCATGTTTGACACGCAGATGGCCGTCGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - tgcatgt
- - - - - - - - - - tgtgtat
- - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - - -aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaccgc