1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGACACCCGGCCCAGCACTTCACCACGAAATGACGCCGAGCTAGCGGCTGCGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacccagaacgaatcagcacgagccttcacccagcatacgccatccagccttgcccacagctgcaaactgcctgaagcatgcatcaatcagggcagccacccgacaaaccttgacacacaccctgcaaagatcgacgccataagccgtaacccgaaacctacatcactcacag
species | Chlamydomonas reinhardtii |
transcript | EDP03695 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGG AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCGEST: gi|15695316|gb|BI719621.1|BI719621
genomic: -GGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
EST: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGG AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCGEST: gi|15695164|gb|BI719469.1|BI719469
genomic: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
EST: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGG AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCGEST: gi|9027717|gb|BE237757.1|BE237757
genomic: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
EST: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGA AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
genomic: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACACCCGGCCCAGCACTTCACCACGAAATGACGCCGAGCTAGCGGCTGCGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacccagaacgaatcagcacgagccttcacccagcatacgccatccagccttgcccacagctgcaaactgcctgaagcatgcatcaatcagggcagccacccgacaaaccttgacacacaccctgcaaagatcgacgccataagccgtaacccgaaacctacatcactcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC