1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCCATTAGGCTCTAAATTTGATAAAGCAATTCGCCGCGCAGAATGGTCTCGCATAGAGGGGCGCGCGGGCCCGTCGGCTCAGCAGCAGAAGCGTTAAAGgtgtgtgtgcttacgaagtactagggagccttggattcaggccgggccgcgaacgctgccgaaggaacgcgggcttcgtgaacgtgctattggacccaca...
species | Chlamydomonas reinhardtii |
transcript | EDP03695 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAGCGTTAAAG GATGCGCTTGTTGCAAAGCTGCAACCTGGGATAAGAGAATCCCCGCTGAACEST: gi|15695164|gb|BI719469.1|BI719469
genomic: GAAGCGTTAAAGgtgtgtgtgc ... ctggccgcagGATGCGCTTGTTGCAAAGCTGCAACCTGGGATAAGAGAATCCCCGCTGAAC
EST: CGCATAGAGGGGCGCGCGGGCCCGTCGGCTCAGCAGCAGAAGCGTTAAAG GATGCGCTTGTTGCAAAGCTGCAACCTGGGATAAGAGAATCCCCGCTGAACEST: gi|9027717|gb|BE237757.1|BE237757
genomic: CGCATAGAGGGGCGCGCGGGCCCGTCGGCTCAGCAGCAGAAGCGTTAAAGgtgtgtgtgc ... ctggccgcagGATGCGCTTGTTGCAAAGCTGCAACCTGGGATAAGAGAATCCCCGCTGAAC
EST: CGCATAGAGGGGCGCGCGGGCCCGTCGGCTCAGCAGCAGAAGCGTTAAAG GATGCGCTTGTTGCAAAGCTGCAACCTGGGATAAGAGAATCCCCGCTGAAC
genomic: CGCATAGAGGGGCGCGCGGGCCCGTCGGCTCAGCAGCAGAAGCGTTAAAGgtgtgtgtgc ... ctggccgcagGATGCGCTTGTTGCAAAGCTGCAACCTGGGATAAGAGAATCCCCGCTGAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCATTAGGCTCTAAATTTGATAAAGCAATTCGCCGCGCAGAATGGTCTCGCATAGAGGGGCGCGCGGGCCCGTCGGCTCAGCAGCAGAAGCGTTAAAGgtgtgtgtgcttacgaagtactagggagccttggattcaggccgggccgcgaacgctgccgaaggaacgcgggcttcgtgaacgtgctattggacccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcgtga