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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacccagaacgaatcagcacgagccttcacccagcatacgccatccagccttgcccacagctgcaaactgcctgaagcatgcatcaatcagggcagccacccgacaaaccttgacacacaccctgcaaagatcgacgccataagccgtaacccgaaacctacatcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCGCAGCGCACGTTGAACCGCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP03695
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437687|gb|BM002907.1|BM002907
EST:     GGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGG                         AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
genomic: -GGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
EST: gi|15695316|gb|BI719621.1|BI719621
EST:     CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGG                         AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
genomic: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
EST: gi|15695164|gb|BI719469.1|BI719469
EST:     CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGG                         AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
genomic: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
EST: gi|9027717|gb|BE237757.1|BE237757
EST:     CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGA                         AGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG
genomic: CGGCGGGCGGCAACTCCCGTATGCAGCTCTACTCGCGCGCCAGCGCACGGgtaagcaacc ... tcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccctgcaaagatcgacgccataagccgtaacccgaaacctacatcactcacagAGCGCCGACGCACCCGCTGCCGGCAGCGTCCCAGTGGACTGGACTCTGCCGCAGCGCACGTTGAACCGCAAGGCCTTCGTGCGCGGCGGCGACTTCGCGC
                          ccgtaac  putative branch site (score: 3)