Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcggggatagggtgaggaggctaggggagggcgtgcgcgtacggcggggaacgcgcagggtctggaggacgcctccgacgagcggcacgggcaggcacgggccttacacaccagcagctgcttgcagccgcctctaacaccgctctgcactactgcctgtctccctatttctgcgcaaccagATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCCCTGCCCGGCATTGACACCCGGCCCAGCACTTCACCACGAAATGACGCCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP03695
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695316|gb|BI719621.1|BI719621
EST:     CGGAGCTAGAGGCGCTCAAAGCGCAAATCAAGCGCCTGATGATGCAGCAA                         ATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCC
genomic: CGGAGCTAGAGGCGCTCAAAGCGCAAATCAAGCGCCTGATGATGCAGCAAgtgagcgggg ... gcgcaaccagATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCC
EST: gi|15695164|gb|BI719469.1|BI719469
EST:     CGGAGCTAGAGGCGCTCAAAGCGCAAATCAAGCGCCTGATGATGCAGCAA                         ATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCC
genomic: CGGAGCTAGAGGCGCTCAAAGCGCAAATCAAGCGCCTGATGATGCAGCAAgtgagcgggg ... gcgcaaccagATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCC
EST: gi|9027717|gb|BE237757.1|BE237757
EST:     CGGAGCTAGAGGCGCTCAAAGCGCAAATCAAGCGCCTGATGATGCAGCAA                         ATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCC
genomic: CGGAGCTAGAGGCGCTCAAAGCGCAAATCAAGCGCCTGATGATGCAGCAAgtgagcgggg ... gcgcaaccagATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccgcctctaacaccgctctgcactactgcctgtctccctatttctgcgcaaccagATAGCACGGAGCTCACCGTCGCGGCAGCGGCCAGACCAGGGCCGCTCCTCCCTGCCCGGCATTGACACCCGGCCCAGCACTTCACCACGAAATGACGCCG
    ctctaac  putative branch site (score: 2)
                                tctccctatttctgc  putative PPT
                                      tatttct  TA-rich tract