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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataacgcctgcctcgcatgcgatcactgcttgcggacctgcctcaagcctgcatgcccgctcctagcgttccagcctgcacctggcctgcctccggcctgcatttaatcattgtctttgcctcatgtatgttccccgcagTTGCTAAGTGACTACATATTGAGGAACATAACGTTCACACTTGCAACGTACTACAACACGGTGTACATCAATACCGACTTCATCTCATATTTCTACGGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDP01956
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700117|gb|BI724422.1|BI724422
EST:     CCTACTTGGCACAACTCTACTCCACGTACCTGAAACCAGCAGAACGGAAG                         TTGCTAAGTGACTACATATTGAGGAACATAACGTTCACACTTGCAACGTAC
genomic: CCTACTTGGCACAACTCTACTCCACGTACCTGAAACCAGCAGAACGGAAGgtaataacgc ... ttccccgcagTTGCTAAGTGACTACATATTGAGGAACATAACGTTCACACTTGCAACGTAC
EST: gi|161823070|gb|FC106640.1|FC106640
EST:     CCTACTTGGCACAACTCTACTCCACGTACCTGAAACCAGCAGAACGGAAG                         TTGCTAAGTGACTACATATTGAGGAACATAACGTTCACACTTGCAACGTAC
genomic: CCTACTTGGCACAACTCTACTCCACGTACCTGAAACCAGCAGAACGGAAGgtaataacgc ... ttccccgcagTTGCTAAGTGACTACATATTGAGGAACATAACGTTCACACTTGCAACGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcctccggcctgcatttaatcattgtctttgcctcatgtatgttccccgcagTTGCTAAGTGACTACATATTGAGGAACATAACGTTCACACTTGCAACGTACTACAACACGGTGTACATCAATACCGACTTCATCTCATATTTCTACGGCG
                atttaat  putative branch site (score: 4)
 tgttcccc  putative PPT
 atttaatcatt  TA-rich tract