1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtagtagtgccgccggcatcaatttagttatgacttgaggttgacacatttccgcccaccttgattgttttatgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGACATGTGACAATCTGAATCCTGCATACGGCGGCACTGTTGCTGCTTGCC
species | Chlamydomonas reinhardtii |
transcript | EDP01956 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGAT GCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGEST: gi|15694918|gb|BI719239.1|BI719239
genomic: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGATgtgagtagta ... tgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTG
EST: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGAT GCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGEST: gi|161803441|gb|FC093057.1|FC093057
genomic: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGATgtgagtagta ... tgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTG
EST: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGAT GCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGEST: gi|16072410|gb|BI874406.1|BI874406
genomic: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGATgtgagtagta ... tgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTG
EST: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGAT GCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGEST: gi|15697242|gb|BI721547.1|BI721547
genomic: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGATgtgagtagta ... tgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTG
EST: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGAT GCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTG
genomic: CCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCCGCGGATgtgagtagta ... tgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTG
ttatgacttgaggttgacacatttccgcccaccttgattgttttatgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGACATGTGACAATCTGAATCCTGCATACGGCGGCACTGTTGCTGCTTGCC
attgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtagtagtgccgccggcatcaatttagttatgacttgaggttgacacatttccgcccaccttgattgttttatgcaatgcagGCTCTGCGCAATTCCCTTGTGTGCCCAGGGTCCCTCATGGATGTTCTTTTGACATGTGACAATCTGAATCCTGCATACGGCGGCACTGTTGCTGCTTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT