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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttagcacctcttgtggtgtggtgggagctgaagctatggaatttatatgattgaacagATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGTGGGCCACCAATCAGTCCTACTTGGCACAACTCTACTCCACGTACCTGAA

Basic information

species Chlamydomonas reinhardtii
transcript EDP01956
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700117|gb|BI724422.1|BI724422
EST:     GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCG                         ATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGT
genomic: GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCGgtaagttagc ... gattgaacagATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGT
EST: gi|161823070|gb|FC106640.1|FC106640
EST:     GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCG                         ATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGT
genomic: GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCGgtaagttagc ... gattgaacagATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGT
EST: gi|161803441|gb|FC093057.1|FC093057
EST:     GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCG                         ATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGT
genomic: GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCGgtaagttagc ... gattgaacagATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGT
EST: gi|16072410|gb|BI874406.1|BI874406
EST:     GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCG                         ATTNTGAATGG
genomic: GCTTGACACACTTGGAGTGGACATCTTCTCCCCGTTTAAAGGATATTTCGgtaagttagc ... gattgaacagATTTTGAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacctcttgtggtgtggtgggagctgaagctatggaatttatatgattgaacagATTTTGAATGGCCGTACGAGACAAGGCAGAGCCAACTCTGCTTGCCCAAGTGGGCCACCAATCAGTCCTACTTGGCACAACTCTACTCCACGTACCTGAA
                                    aatttatatgattgaa  TA-rich tract