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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatccgccggaaggttgcttacttgagagtgcagacagtacatgagcattgaaagtccagtcttgcaacgttttgtggtgcgttgttatcgtgcacagGGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAGCGGTCCCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCC

Basic information

species Chlamydomonas reinhardtii
transcript EDP01956
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15694918|gb|BI719239.1|BI719239
EST:     GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAA                         GGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
genomic: GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAAgtaagatccg ... tcgtgcacagGGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
EST: gi|161803441|gb|FC093057.1|FC093057
EST:     GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAA                         GGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
genomic: GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAAgtaagatccg ... tcgtgcacagGGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
EST: gi|16072410|gb|BI874406.1|BI874406
EST:     GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAA                         GGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
genomic: GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAAgtaagatccg ... tcgtgcacagGGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
EST: gi|15697242|gb|BI721547.1|BI721547
EST:     GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAA                         GGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG
genomic: GCAAACTACCTGTTTGCAACTCTTCCTGCACCCACGACTGATGCTTCTAAgtaagatccg ... tcgtgcacagGGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagcattgaaagtccagtcttgcaacgttttgtggtgcgttgttatcgtgcacagGGTCATCGCGCGCGCCCTGGCTCAGCAGTGCCTGGCACGTGGTAGAGGGAGCGGTCCCTGCCCTGTCGACTACAGCGCCTACAACACCATTCCAATGCCC
                                       ttgttat  TA-rich tract