1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtactacctcgttgtgtactcgcttgctcgcttgcttggggcgacgatgacgaaccagcagtaacatgtacgttgggcctgcgcttgctgtgcgaaacagGGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGCTTCAAGCTGTTCAGTGACGTGCACGAGTTCGCTGCATACCTGCACAATG
species | Chlamydomonas reinhardtii |
transcript | EDP01956 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAGTATCTGCCAGGGCCTCTCGATCCTTCAGCAGCAGCCG GGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGCEST: gi|161803441|gb|FC093057.1|FC093057
genomic: ACAGTATCTGCCAGGGCCTCTCGATCCTTCAGCAGCAGCCGgtgggtaggc ... tgcgaaacagGGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGC
EST: CTGCCAGGGCCTCTCGATCCTTCAGCAGCAGCCG GGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGCEST: gi|15697242|gb|BI721547.1|BI721547
genomic: CTGCCAGGGCCTCTCGATCCTTCAGCAGCAGCCGgtgggtaggc ... tgcgaaacagGGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGC
EST: TCAAGGTGTACAGTATCTGCCAGGGCCTCTCGATCCTTCAGCAGCAGCCG GGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGC
genomic: TCAAGGTGTACAGTATCTGCCAGGGCCTCTCGATCCTTCAGCAGCAGCCGgtgggtaggc ... tgcgaaacagGGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGC
gatgacgaaccagcagtaacatgtacgttgggcctgcgcttgctgtgcgaaacagGGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGCTTCAAGCTGTTCAGTGACGTGCACGAGTTCGCTGCATACCTGCACAATG
cagtaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactacctcgttgtgtactcgcttgctcgcttgcttggggcgacgatgacgaaccagcagtaacatgtacgttgggcctgcgcttgctgtgcgaaacagGGAACGGTGGCCCGGATGGTCACTATCACGGACCAGCAGCCTAACCCATGCTTCAAGCTGTTCAGTGACGTGCACGAGTTCGCTGCATACCTGCACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - gttgtgt
- - - - - - - - -actcgct
- - - - - - - - - - - - - - - -ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -accagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgta