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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCCGTTGAAGAAGACGGCGAGGGCGGCGCGGCGCCGGCTGCCGGGGGCCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggcggcgtgcgtgtgtgtttgtgtgttggggcttggggagagtgtgaggcgagatgcgatgcgtcatagagcccaaagaatgtgtggtcccactcgtggaatagacggcaactggattgaatgtatggtactgtgcgtgttcgcttgcacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP01925
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369065|gb|BI528491.1|BI528491
EST:     CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: gi|161821529|gb|FC109824.1|FC109824
EST:     CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: gi|161821528|gb|FC109823.1|FC109823
EST:     CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTTTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: gi|15371073|gb|BI530499.1|BI530499
EST:     CGCAGCGTGAGCAAGCCCAAGATGNGAGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CGCAGCGTGAGCAAGCCCAAGATG-GAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: gi|16071386|gb|BI873382.1|BI873382
EST:     CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: gi|16071971|gb|BI873967.1|BI873967
EST:     CGCAGCGTGAGCAAGCCCAAGATGGAGGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCNGCCGCCGCGTGGTCCCAAG
genomic: CGCAGCGTGAGCAAGCCCAAGATGGAGG-TGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCC-GCCGCCGCGTGGTCCCAAG
EST: gi|161790553|gb|FC077670.1|FC077670
EST:     CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: gi|161790552|gb|FC077669.1|FC077669
EST:     CCGCAGCGTGAGCAATCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG                         ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCCGTTGAAGAAGACGGCGAGGGCGGCGCGGCGCCGGCTGCCGGGGGCCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggcggcgtgcgtgtgtgtttgtgtgttggggcttggggagagtgtgaggcgagatgcgatgcgtcatagagcccaaagaatgtgtggtcccactcgtggaatagacggcaactggattgaatgtatggtactgtgcgtgttcgcttgcacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG