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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCTAAGCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagcggcggcagggggaggggggggagggaaggcagcttggggatagggccgtgggatagggccgtcatgcgcacggttcaaggagctggcttt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01925
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369065|gb|BI528491.1|BI528491
EST:     GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|161821529|gb|FC109824.1|FC109824
EST:     GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|161821528|gb|FC109823.1|FC109823
EST:     AAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTTG                         CCGTAAGCAACATGGTGACGGTTTCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: AAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|15371073|gb|BI530499.1|BI530499
EST:     GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGG-TGGG
genomic: GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|16071386|gb|BI873382.1|BI873382
EST:     TCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: TCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|8933102|gb|BE227863.1|BE227863
EST:     GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|16071971|gb|BI873967.1|BI873967
EST:     GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|161790553|gb|FC077670.1|FC077670
EST:     GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: GCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
EST: gi|161790552|gb|FC077669.1|FC077669
EST:     TAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCG                         CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG
genomic: TAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagc ... cctctggcagCCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCTAAGCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGACTCGgtgagtcagcggcggcagggggaggggggggagggaaggcagcttggggatagggccgtgggatagggccgtcatgcgcacggttcaaggagctggcttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggat