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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtgcagggccgtgcttggtgttggtctgttctatgtcgcctggcgccatcctagcaggggccgactgccgggacgcaaatcattgcctgctac...

Basic information

species Chlamydomonas reinhardtii
transcript EDP01925
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369065|gb|BI528491.1|BI528491
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|161821529|gb|FC109824.1|FC109824
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|161821528|gb|FC109823.1|FC109823
EST:     GGTGACGGTTTCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGATGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|15371073|gb|BI530499.1|BI530499
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGG-TGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|16071386|gb|BI873382.1|BI873382
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGNNNNNN
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|8933102|gb|BE227863.1|BE227863
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|16071971|gb|BI873967.1|BI873967
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|161790553|gb|FC077670.1|FC077670
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
EST: gi|161790552|gb|FC077669.1|FC077669
EST:     GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGA                         GCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG
genomic: GGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtg ... gctgccgcagGCATCCGCACGGGTCTTGAGCTGCTGGAGCACTCGGCCGCCGTTGAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTAAGCAACATGGTGACGGTTGCTGAGATCCTGAAGAAAGACGGCTGGGCGGTTGAGAAGAgtgagtcgtgcagggccgtgcttggtgttggtctgttctatgtcgcctggcgccatcctagcaggggccgactgccgggacgcaaatcattgcctgctac

- - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctgc