1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggggcgtcagtgtggccccaagcgtgttgacctccaccaagctggagttggcgtgcgaatccttaccctccccccgcggcctcggattcccccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCTAAGCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGA
species | Chlamydomonas reinhardtii |
transcript | EDP01925 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCG GGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCEST: gi|161821529|gb|FC109824.1|FC109824
genomic: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCGgtgcgcttac ... cccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
EST: ACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCG GGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCEST: gi|15371073|gb|BI530499.1|BI530499
genomic: ACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCGgtgcgcttac ... cccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
EST: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCG GGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCEST: gi|8933102|gb|BE227863.1|BE227863
genomic: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCGgtgcgcttac ... cccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
EST: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCG GGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCEST: gi|16071971|gb|BI873967.1|BI873967
genomic: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCGgtgcgcttac ... cccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
EST: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCG GGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCEST: gi|161790553|gb|FC077670.1|FC077670
genomic: CACCGAACAACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCGgtgcgcttac ... cccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
EST: ACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCG GGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
genomic: ACAAAGATGTCGGACGCTGCTGCTGGTCGCCAGCCGAACCGgtgcgcttac ... cccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTC
agttggcgtgcgaatccttaccctccccccgcggcctcggattcccccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCTAAGCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGA
tccttac putative branch site (score: 2)
ttcccccctcgc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggcgtcagtgtggccccaagcgtgttgacctccaccaagctggagttggcgtgcgaatccttaccctccccccgcggcctcggattcccccctcgcagGGTCCAGGTCAGCTCCAACAAGAAGCCACTGCAGTTCTATCTCAACCTCTCTAAGCGTCTGCTAAATGAGTATGGCGAGGTGGAGCTGTCAGCGCTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - caccaag