1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaggcggcggcgtgcgtgtgtgtttgtgtgttggggcttggggagagtgtgaggcgagatgcgatgcgtcatagagcccaaagaatgtgtggtcccactcgtggaatagacggcaactggattgaatgtatggtactgtgcgtgttcgcttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGCTGCCGCCGCGGATGGCGAGGGCGAGGAGGTCGAGGCCGAGTAAGGGGG
species | Chlamydomonas reinhardtii |
transcript | EDP01925 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGEST: gi|161821529|gb|FC109824.1|FC109824
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGEST: gi|161821528|gb|FC109823.1|FC109823
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTTTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGEST: gi|15371073|gb|BI530499.1|BI530499
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: CGCAGCGTGAGCAAGCCCAAGATGNGAGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGEST: gi|16071386|gb|BI873382.1|BI873382
genomic: CGCAGCGTGAGCAAGCCCAAGATG-GAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGEST: gi|16071971|gb|BI873967.1|BI873967
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: CGCAGCGTGAGCAAGCCCAAGATGGAGGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCNGCCGCCGCGTGGTCCCAAGEST: gi|161790553|gb|FC077670.1|FC077670
genomic: CGCAGCGTGAGCAAGCCCAAGATGGAGG-TGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCC-GCCGCCGCGTGGTCCCAAG
EST: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGEST: gi|161790552|gb|FC077669.1|FC077669
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
EST: CCGCAGCGTGAGCAATCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGG ACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
genomic: CCGCAGCGTGAGCAAGCCCAAGATGGAGGTGGTGCTGGCCAAGTCTGCGGgtgaggcggc ... ttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGG
aatagacggcaactggattgaatgtatggtactgtgcgtgttcgcttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGCTGCCGCCGCGGATGGCGAGGGCGAGGAGGTCGAGGCCGAGTAAGGGGG
ttcgctt CT-rich tract
attgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggcggcggcgtgcgtgtgtgtttgtgtgttggggcttggggagagtgtgaggcgagatgcgatgcgtcatagagcccaaagaatgtgtggtcccactcgtggaatagacggcaactggattgaatgtatggtactgtgcgtgttcgcttgcacgcagACTTTGACCGCCTGTTTGCGGAGCACCCTCCGCCGCCGCGTGGTCCCAAGGCTGCCGCCGCGGATGGCGAGGGCGAGGAGGTCGAGGCCGAGTAAGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG