1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcacccgccaccgcagcatctaccaattgctctgcctgcctgtcttgcaacatgcactaacacatgcctcgctgcatacggcattggtgaactacgacagGTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGATCGACGACAAGGTGGCGGTGAAGCTGGGGCCCGGCGACTGGTCGCCCAAC
species | Chlamydomonas reinhardtii |
transcript | EDP00963 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAG GTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGATEST: gi|161820586|gb|FC107048.1|FC107048
genomic: ATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAGgtgagatgga ... actacgacagGTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGAT
EST: ATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAG GTCGAAGGTGGTGGTGAAGAAGTCGGCGGCGGACGTGTACGCGGCGATGATEST: gi|15704347|gb|BI728652.1|BI728652
genomic: ATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAGgtgagatgga ... actacgacagGTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGAT
EST: ATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAG GTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGAT
genomic: ATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAGgtgagatgga ... actacgacagGTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGAT
tgcaacatgcactaacacatgcctcgctgcatacggcattggtgaactacgacagGTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGATCGACGACAAGGTGGCGGTGAAGCTGGGGCCCGGCGACTGGTCGCCCAAC
cactaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcacccgccaccgcagcatctaccaattgctctgcctgcctgtcttgcaacatgcactaacacatgcctcgctgcatacggcattggtgaactacgacagGTCGAAGGTGGTGATGAAGAAGTCGGCGGCGGACGTGTACGCGGCAATGATCGACGACAAGGTGGCGGTGAAGCTGGGGCCCGGCGACTGGTCGCCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
gcacccg
- - - - caccgca
- - - - - - - - catctac
- - - - - - - - - - - - - - - - - - tgcctgt
- - - - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatacg