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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcacgggggtgggggcgtagggtccgcatgtgcggagtggggcggtttgacggtggctgggatggccgggcgaacggaaagcacgtggtttgctgggtgcgtcagggaaggtgtgttagcaaaagtaggttctgcggacacccactcagatgcatctgcgaacgcgacaccacagGACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGCTGGCGCTTCGACTTCGTGCGCGGCTACCTGGGCTCGTACTGCAAGCAGT

Basic information

species Chlamydomonas reinhardtii
transcript EDP00963
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072478|gb|BQ821816.1|BQ821816
EST:     ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAAC                         GACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
genomic: ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAACgtgagtcacg ... gacaccacagGACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
EST: gi|161820586|gb|FC107048.1|FC107048
EST:     ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAAC                         GACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
genomic: ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAACgtgagtcacg ... gacaccacagGACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
EST: gi|22069916|gb|BQ819393.1|BQ819393
EST:     ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAAC                         GACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
genomic: ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAACgtgagtcacg ... gacaccacagGACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
EST: gi|22054671|gb|BQ811463.1|BQ811463
EST:     ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAAC                         GACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC
genomic: ACTACGCCGCCGCGCCCAACATCGACCACTCGCAGGAGCGCATCCGCAACgtgagtcacg ... gacaccacagGACATCGTGCAATGGATGAAGTACCTGCGCAACTCGATTGGCTTCGACGGC