1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTACTGCAAGCAGTACATTGACGAGACCGTGCCCGCCATGGCCTTCGGCGAGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcaggggctgtgggctgaatgggctgtcaagccgcatacgtcgcattgtgaagaggagcgtaatgctacgttgcggcgagacgacttggctggctgcatgttgtgtcagggttgtatgagcaccatattcagttcgcgagcgcctgattgctttcgtcgactgcag
species | Chlamydomonas reinhardtii |
transcript | EDP00963 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAG GACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACTEST: gi|161820586|gb|FC107048.1|FC107048
genomic: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcagg ... tcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
EST: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAG GACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACCEST: gi|22069916|gb|BQ819393.1|BQ819393
genomic: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcagg ... tcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
EST: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAG GACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
genomic: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcagg ... tcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTGCAAGCAGTACATTGACGAGACCGTGCCCGCCATGGCCTTCGGCGAGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcaggggctgtgggctgaatgggctgtcaagccgcatacgtcgcattgtgaagaggagcgtaatgctacgttgcggcgagacgacttggctggctgcatgttgtgtcagggttgtatgagcaccatattcagttcgcgagcgcctgattgctttcgtcgactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC