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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggggcaggggctgtgggctgaatgggctgtcaagccgcatacgtcgcattgtgaagaggagcgtaatgctacgttgcggcgagacgacttggctggctgcatgttgtgtcagggttgtatgagcaccatattcagttcgcgagcgcctgattgctttcgtcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACTAGCGCCGCCTTTGACTTCACCACCAAGGGTATCCTCCAGGAGGCGGTGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP00963
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22072478|gb|BQ821816.1|BQ821816
EST:     AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAG                         GACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
genomic: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcagg ... tcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
EST: gi|161820586|gb|FC107048.1|FC107048
EST:     AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAG                         GACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACC
genomic: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcagg ... tcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
EST: gi|22069916|gb|BQ819393.1|BQ819393
EST:     AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAG                         GACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT
genomic: AGTACTGGGACAGCTGCGAGTACACGGACGGCGTGCTCAACTACAACCAGgtggggcagg ... tcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatgagcaccatattcagttcgcgagcgcctgattgctttcgtcgactgcagGACGCGCACCGCCAGCGCACCGTGAACTGGTGCGACTCGACGGGCGGCACTAGCGCCGCCTTTGACTTCACCACCAAGGGTATCCTCCAGGAGGCGGTGG
                              gcctgat  putative branch site (score: 4)
                                       ctttcgtc  putative PPT
             atattca  TA-rich tract