1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggtaaattgtagcatgcacgcatgtgccttaccttacgcccctggctcggatgttcacggtccatcatggctttaatgttcacggtccatcttgctgcagGAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAG
species | Chlamydomonas reinhardtii |
transcript | EDP00963 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAG GAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGGEST: gi|22072478|gb|BQ821816.1|BQ821816
genomic: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAGgtgcgcgtgc ... cttgctgcagGAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGG
EST: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAG GAGGAGAACAACCTCCGGAAGATCAEST: gi|161820586|gb|FC107048.1|FC107048
genomic: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAGgtgcgcgtgc ... cttgctgcagGAGGAGAACAACCTCCGGAAGATCA
EST: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAG GAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGGEST: gi|15704347|gb|BI728652.1|BI728652
genomic: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAGgtgcgcgtgc ... cttgctgcagGAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGG
EST: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAG GAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGG
genomic: TCCTGACGCACCCCGGCACGCCCTGCGTCTTCTACGACCACTTCTACCAGgtgcgcgtgc ... cttgctgcagGAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGG
ctcggatgttcacggtccatcatggctttaatgttcacggtccatcttgctgcagGAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAG
ctttaat putative branch site (score: 4)
tccatctt putative PPT
tttaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaaattgtagcatgcacgcatgtgccttaccttacgcccctggctcggatgttcacggtccatcatggctttaatgttcacggtccatcttgctgcagGAGGAGAACAACCTCCGGAAGATCATCCTGGACCTGCTGAAGGTTCGTCGGCGCAACGGCCTCAACGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - -acgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaatgt