1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acactgccctcccacacccatgacccacatgcgcacacacatacacgttcttgtgctttcttagcacacccctacacacgcgcggcccccctccctccagATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTGGCTGGCTGGCTGGCGCCCAACCGCATCTACGACGGCGTGGCGGACCCGG
species | Chlamydomonas reinhardtii |
transcript | EDO99690 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCACCTGCTGCCAGCCAAGATGGCGGAGTGGGGGCTGCAGCGAGGAGAC ATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTGEST: gi|22064946|gb|BQ816099.1|BQ816099
genomic: AGCACCTGCTGCCAGCCAAGATGGCGGAGTGGGGGCTGCAGCGAGGAGACgtaagagaat ... ctccctccagATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTG
EST: AGCACCTGCTGCCAGCCAAGATGGCGGAGTGGGGGCTGCAGCGAGGAGAC ATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTG
genomic: AGCACCTGCTGCCAGCCAAGATGGCGGAGTGGGGGCTGCAGCGAGGAGACgtaagagaat ... ctccctccagATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTG
cgttcttgtgctttcttagcacacccctacacacgcgcggcccccctccctccagATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTGGCTGGCTGGCTGGCGCCCAACCGCATCTACGACGGCGTGGCGGACCCGG
cggcccccctccctcc CT-rich tract
tttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acactgccctcccacacccatgacccacatgcgcacacacatacacgttcttgtgctttcttagcacacccctacacacgcgcggcccccctccctccagATGGTGGAGTTGTTCGGGCGGGTGCGTGACGACTGGATCGCGGCCGACCTGGCTGGCTGGCTGGCGCCCAACCGCATCTACGACGGCGTGGCGGACCCGG
acactgc
- - - - - - cacaccc
- - - - - - -acaccca
- - - - - - - - - - - acccaca
- - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg