1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcccaactcccatacgtacacacacatacacccctccacgtccctagcaccccaaccaacgaaccaaccaaccgcacacgcacacacgcgccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCCGCAAGGGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGG
species | Chlamydomonas reinhardtii |
transcript | EDO99690 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAG GCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCEST: gi|22064946|gb|BQ816099.1|BQ816099
genomic: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacct ... ccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
EST: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAG GCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCEST: gi|10128077|gb|BE726653.1|BE726653
genomic: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacct ... ccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
EST: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAG GCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
genomic: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacct ... ccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
agcaccccaaccaacgaaccaaccaaccgcacacgcacacacgcgccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCCGCAAGGGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGG
ccaccccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccaactcccatacgtacacacacatacacccctccacgtccctagcaccccaaccaacgaaccaaccaaccgcacacgcacacacgcgccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCCGCAAGGGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - aactccc
- - - - - -atacgta
- - - - - - - - -acacaca
- - - - - - - - - - - - - -acacccc
- - - - - - - - - - - - - - - - - - - - - - - - accccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg