1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cgcgctcccaaccgccacgttgtccgcatgccagcaacacgttgtccgtgtgatgtggacaagttgccccaatgacgtttgttaatgtgtgcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGACGACATGCTGAGCAGCTGGGAGCACCTGCTGCCAGCCAAGATGGCGGAG
species | Chlamydomonas reinhardtii |
transcript | EDO99690 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGG GTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGAEST: gi|22064946|gb|BQ816099.1|BQ816099
genomic: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccg ... gcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
EST: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGG GTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGAEST: gi|10128077|gb|BE726653.1|BE726653
genomic: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccg ... gcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
EST: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGG GTATGAGAACATCGTTCAGATCCGGTCCCTGTACGAGGGCGTGTCGGTGGA
genomic: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccg ... gcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
ccgtgtgatgtggacaagttgccccaatgacgtttgttaatgtgtgcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGACGACATGCTGAGCAGCTGGGAGCACCTGCTGCCAGCCAAGATGGCGGAG
tgttaat putative branch site (score: 3)
tttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcgctcccaaccgccacgttgtccgcatgccagcaacacgttgtccgtgtgatgtggacaagttgccccaatgacgtttgttaatgtgtgcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGACGACATGCTGAGCAGCTGGGAGCACCTGCTGCCAGCCAAGATGGCGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ctcccaa
- - - - - - - - - - - - -gcatgcc
- - - - - - - - - - - - - - - - - caacacg
- - - - - - - - - - - - - - - - - - - - - - -ccgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - atgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtta