1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCAGCTGTTGCCGCGCCGACACAGCAGAAGCTCATTGCGCTGGACTTTGATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacctcgagctggcgttgcgtgcgggtttcgggctgcacgaggccttctgagccgtccgccagggcacagctgggggccctgcatgcagtcgctg...
species | Chlamydomonas reinhardtii |
transcript | EDO99690 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAG GCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCEST: gi|22064946|gb|BQ816099.1|BQ816099
genomic: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacct ... ccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
EST: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAG GCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCEST: gi|10128077|gb|BE726653.1|BE726653
genomic: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacct ... ccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
EST: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAG GCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
genomic: ATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacct ... ccacccccagGCCGCCGCCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCAGCTGTTGCCGCGCCGACACAGCAGAAGCTCATTGCGCTGGACTTTGATGGCGTGGTGTGCGACTCGGTCGGGGAGAGCAGCCTGTCCGCCTTCAAGgtgcacacctcgagctggcgttgcgtgcgggtttcgggctgcacgaggccttctgagccgtccgccagggcacagctgggggccctgcatgcagtcgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc