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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCCGCAAGGGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccggtgctgagcctgctgggccgggggggtcgtgggagggggcgggcagggcggtccgggtgtgggccggagattgcgcggcgccggaatggg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO99690
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6542698|gb|AV388482.1|AV388482
EST:     GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGG                         GTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
genomic: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccg ... gcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
EST: gi|22064946|gb|BQ816099.1|BQ816099
EST:     GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGG                         GTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
genomic: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccg ... gcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA
EST: gi|10128077|gb|BE726653.1|BE726653
EST:     GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGG                         GTATGAGAACATCGTTCAGATCCGGTCCCTGTACGAGGGCGTGTCGGTGGA
genomic: GGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccg ... gcgtgcacagGTATGAGAACATCGTTCAGATCCGGGCCCTGTACGAGGGCGTGTCGGTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATCCTGTGGCCGCACATCTTCGAAACACCCGCTGCCGAGTCCCGCAAGGGGGAGCTGGTAGAGAAGATGCGGGCCGTGCGCCCCGTGGTGGAGACCGGgtgagcgccggtgctgagcctgctgggccgggggggtcgtgggagggggcgggcagggcggtccgggtgtgggccggagattgcgcggcgccggaatggg

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg