1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tggcgtggctgcagcgcattacgcggtggcgtcgggctctgccttaccggggcctggttcacaaaggcatttctgctgctgtctctttatcaaatgccagGTCGCGGACATGGCCGCCAAGGGCATGGACTACGAGAAGGAGAAGCTGAAGAAGCGGATTGACAACCTGAAGGCGAAGGGCATGTTCGAGGAGCGCGTGC
species | Chlamydomonas reinhardtii |
transcript | EDO99032 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCGGCGGCAAGGCTGAGGTGCTGGCCGCTAAGACCAAGTGGACCAAGAAGGCGCACAAGGCCCTGEST: gi|161790525|gb|FC080008.1|FC080008
genomic: CCGGCGGCAAGGCCGAGGTGCTGGCCGCTAAGACCAAGTGGACC---AA---G---AA------Ggtgggcaggg
EST: CCGGCGGCAAGGCTGAGGTGCTGGCCGCTAAGACCAAGTGGACCAAGAAGGCGCACAAGGCCCTG
genomic: CCGGCGGCAAGGCCGAGGTGCTGGCCGCTAAGACCAAGTGGACC---AA---G---AA------Ggtgggcaggg
accggggcctggttcacaaaggcatttctgctgctgtctctttatcaaatgccagGTCGCGGACATGGCCGCCAAGGGCATGGACTACGAGAAGGAGAAGCTGAAGAAGCGGATTGACAACCTGAAGGCGAAGGGCATGTTCGAGGAGCGCGTGC
gccttac putative branch site (score: 3)
tctctttatc putative PPT
tttatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcgtggctgcagcgcattacgcggtggcgtcgggctctgccttaccggggcctggttcacaaaggcatttctgctgctgtctctttatcaaatgccagGTCGCGGACATGGCCGCCAAGGGCATGGACTACGAGAAGGAGAAGCTGAAGAAGCGGATTGACAACCTGAAGGCGAAGGGCATGTTCGAGGAGCGCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaagg