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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGTCCTCGGATGCTCGCCTGCGCCTGCACAACCTGAGCCCCGAGCCCGGCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggactgggacgaggcttttgcggcgcagaatgtgggtggtgctcgcagctcaactatgcgacctgccgccttcctgtatttgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99032
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437899|gb|BM003119.1|BM003119
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|6544744|gb|AV390528.1|AV390528
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|9441045|gb|BE441541.1|BE441541
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|10776288|gb|AV632968.1|AV632968
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         NGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|10778749|gb|AV635429.1|AV635429
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|161790525|gb|FC080008.1|FC080008
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|9460375|gb|BE453200.1|BE453200
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|16073310|gb|BI875306.1|BI875306
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|8513980|gb|BE121875.1|BE121875
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|10778737|gb|AV635417.1|AV635417
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|22076293|gb|BQ825069.1|BQ825069
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|9210716|gb|BE337631.1|BE337631
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|10781474|gb|AV638154.1|AV638154
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|10775307|gb|AV631987.1|AV631987
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|9028139|gb|BE238179.1|BE238179
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
EST: gi|22072323|gb|BQ821661.1|BQ821661
EST:     GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAG                         GGTGGCACCTGCAGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC
genomic: GCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggact ... gtatttgtagGGTGGCACCTGCGGTTTCGGTAACCGTGGTCAGAAGGCGCGCTCGGGCCCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGTCCTCGGATGCTCGCCTGCGCCTGCACAACCTGAGCCCCGAGCCCGGCAGCCGGCGTGATGAGAAGCGCAAGGGTCGTGGTTATGCTGCTGGCCAGgtgcgggactgggacgaggcttttgcggcgcagaatgtgggtggtgctcgcagctcaactatgcgacctgccgccttcctgtatttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT