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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgaacgggcggtggcttgcaacgtgtagctccaagctttcaaggcctcaaagctgcaaattgagctatcttccattctatgggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGCTCTCTTGTTGTGGTGAACGCGTCCTCGGATGCTCGCCTGCGCCTGCACA

Basic information

species Chlamydomonas reinhardtii
transcript EDO99032
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437899|gb|BM003119.1|BM003119
EST:     GACCATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: GACCATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|9441045|gb|BE441541.1|BE441541
EST:     GTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: GTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|10776288|gb|AV632968.1|AV632968
EST:     TAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: TAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|10778749|gb|AV635429.1|AV635429
EST:     TAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: TAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|9460375|gb|BE453200.1|BE453200
EST:     TGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: TGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|16073310|gb|BI875306.1|BI875306
EST:     GACCATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: GACCATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|8513980|gb|BE121875.1|BE121875
EST:     GTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: GTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|10778737|gb|AV635417.1|AV635417
EST:     GTTGTTATCCTTTA-CGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: GTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|22076293|gb|BQ825069.1|BQ825069
EST:     GACCATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: GACCATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|9210716|gb|BE337631.1|BE337631
EST:     CTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: CTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|10781474|gb|AV638154.1|AV638154
EST:     CTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: CTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|10775307|gb|AV631987.1|AV631987
EST:     TAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: TAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|9028139|gb|BE238179.1|BE238179
EST:     CTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: CTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
EST: gi|22075132|gb|BQ823908.1|BQ823908
EST:     CATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAG                         GTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC
genomic: CATATATCTCTGTTGTTATCCTTTAGCGTAACAACAGGACAATGCAGgtgcgaacgg ... gggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcaaggcctcaaagctgcaaattgagctatcttccattctatgggaattcagGTGGCTTCGCGCGCTTCGGTGCGCCCCTTCACGGCGGCTCGCCAGCCCCGCTCTCTTGTTGTGGTGAACGCGTCCTCGGATGCTCGCCTGCGCCTGCACA
                     aaattga  TA-rich tract