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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCAGAAGGCGCGCTCGGGCCCCAGCGTGCGGCCTGGCTTTGAGGGTGGCCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcgtatatcagttacgccgggcacgcacggctgggcatcggtttggcaaagcgacgcttgagttggaggggcattttgtggctgaactcagga...

Basic information

species Chlamydomonas reinhardtii
transcript EDO99032
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16437899|gb|BM003119.1|BM003119
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|6544744|gb|AV390528.1|AV390528
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|9441045|gb|BE441541.1|BE441541
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|10776288|gb|AV632968.1|AV632968
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|10778749|gb|AV635429.1|AV635429
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|161812417|gb|FC098571.1|FC098571
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|161790525|gb|FC080008.1|FC080008
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|9460375|gb|BE453200.1|BE453200
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|16073310|gb|BI875306.1|BI875306
EST:     CCAGACCCCTCTCTACCGACGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGT
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|8513980|gb|BE121875.1|BE121875
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|10778737|gb|AV635417.1|AV635417
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|22076293|gb|BQ825069.1|BQ825069
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|9210716|gb|BE337631.1|BE337631
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|10781474|gb|AV638154.1|AV638154
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|10775307|gb|AV631987.1|AV631987
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTG
EST: gi|9028139|gb|BE238179.1|BE238179
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
EST: gi|22072323|gb|BQ821661.1|BQ821661
EST:     CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCG                         GCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG
genomic: CCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcg ... gcttcaacagGCATGAGCGCTGGCCTGCCCGACTTCGTGGTGGTGAACCTGGATGACCTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCAGAAGGCGCGCTCGGGCCCCAGCGTGCGGCCTGGCTTTGAGGGTGGCCAGACCCCTCTCTACCGCCGCCTGCCCAAGCTGCGTGGTATTGCCGGCGgtaggttgcgtatatcagttacgccgggcacgcacggctgggcatcggtttggcaaagcgacgcttgagttggaggggcattttgtggctgaactcagga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgg