1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTGGAGAAGCACTTCAACGCTGGCGAGGACGTGACCCTGGCTGCCGTGAAGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtacttggcctaggcacaaaggggctgactggcggtgggccatgtacaacgcaggcgtcaggttgcgagcctttaggtgctggacaggcaacac...
species | Chlamydomonas reinhardtii |
transcript | EDO99032 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGAGAAGGTGAAGAGCATTAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|6544744|gb|AV390528.1|AV390528
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|9441045|gb|BE441541.1|BE441541
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|10776288|gb|AV632968.1|AV632968
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCEST: gi|10778749|gb|AV635429.1|AV635429
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGC
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGEST: gi|161812417|gb|FC098571.1|FC098571
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTG
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|161790525|gb|FC080008.1|FC080008
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|9460375|gb|BE453200.1|BE453200
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|16073310|gb|BI875306.1|BI875306
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGEST: gi|8513980|gb|BE121875.1|BE121875
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTG
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|10778737|gb|AV635417.1|AV635417
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|22076293|gb|BQ825069.1|BQ825069
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|9210716|gb|BE337631.1|BE337631
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GGGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|10781474|gb|AV638154.1|AV638154
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|9028139|gb|BE238179.1|BE238179
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCTEST: gi|22072323|gb|BQ821661.1|BQ821661
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGCCACCGCT
EST: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAG GTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGC
genomic: AGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtac ... gttgcatcagGTGCTGGGCACTGGCAGCCTGAGCAAGTCGCTGAACGTGCACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGAGAAGCACTTCAACGCTGGCGAGGACGTGACCCTGGCTGCCGTGAAGGAGAAGGTGAAGAGCATCAGCGGCCGCGATGCCTCCCTACCCCTGAAGgtaagcgtacttggcctaggcacaaaggggctgactggcggtgggccatgtacaacgcaggcgtcaggttgcgagcctttaggtgctggacaggcaacac
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcaaca