1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cacctctgctgcactcacaccacaccacttcattcgccgccaccacctaacactcacccgccctgccctgcatcacaccacaccacacacaaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAGAACGGTTCCGGCAAGTCCAACTTCCTCAAGTGCATCGCCAAGCGCGAG
species | Chlamydomonas reinhardtii |
transcript | EDO98590 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAG GACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGEST: gi|10787237|gb|AV643909.1|AV643909
genomic: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAGgtgtgtgtac ... aaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTG
EST: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAG GACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGAEST: gi|10787502|gb|AV644174.1|AV644174
genomic: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAGgtgtgtgtac ... aaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGA
EST: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAG GACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAGEST: gi|49470170|gb|BP098031.1|BP098031
genomic: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAGgtgtgtgtac ... aaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAG
EST: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAG GACTGCTCCATCGAGCTGACCATCGGCEST: gi|10787657|gb|AV644329.1|AV644329
genomic: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAGgtgtgtgtac ... aaacatgcagGACTGCTCCATCGAGCTGACCATCGGC
EST: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAG GACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAGEST: gi|10787668|gb|AV644340.1|AV644340
genomic: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAGgtgtgtgtac ... aaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAG
EST: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAG GACTGCTCCATCGAGCTGACCATCGGCCGC
genomic: TCAAGATCGACGGCTTCAGCATGGGCCTCAACGGCTGCGAGCTGATCCAGgtgtgtgtac ... aaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGC
cctaacactcacccgccctgccctgcatcacaccacaccacacacaaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAGAACGGTTCCGGCAAGTCCAACTTCCTCAAGTGCATCGCCAAGCGCGAG
cactcac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacctctgctgcactcacaccacaccacttcattcgccgccaccacctaacactcacccgccctgccctgcatcacaccacaccacacacaaacatgcagGACTGCTCCATCGAGCTGACCATCGGCCGCCGCTACGGTCTGATTGGCCAGAACGGTTCCGGCAAGTCCAACTTCCTCAAGTGCATCGCCAAGCGCGAG
- - - - - - actcaca
- - - - - - - tcacacc
- - - - - - - - acaccac
- - - - - - - - - - - - - - - - - - - -ccaccac
- - - - - - - - - - - - - - - - - - - - - - - - -acactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaca