1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...caccggccagttagaacaactctgacagggggctaccacattacaccttacacacgcaacaaaactaaatcgccccgctaccaatccttgcaacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAGAAGATGGGCCTCAGCGGCGTGCCCGGCAAGAAGTAAACTGCAGCCCCCC
species | Chlamydomonas reinhardtii |
transcript | EDO98590 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAG GTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAGEST: gi|15692896|gb|BI717201.1|BI717201
genomic: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAGgtgaggaggg ... caacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAG
EST: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAG GTGACGATGTGGAAGGGCGACATCCGCGACTACAAGGCGCTGCTGGCCAAGEST: gi|23360787|gb|BU648607.1|BU648607
genomic: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAGgtgaggaggg ... caacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAG
EST: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAG GTGACGATGTGGAAGGGCGACATTCGCGACTATAAAGCGCTGCTGGCCAAGEST: gi|10780997|gb|AV637677.1|AV637677
genomic: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAGgtgaggaggg ... caacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAG
EST: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAG GTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAG
genomic: GCCTCATCGACCAGGTGGCCAAGGAGATCTGGGTGTGCGAGGACAAGAAGgtgaggaggg ... caacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAG
ccttacacacgcaacaaaactaaatcgccccgctaccaatccttgcaacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAGAAGATGGGCCTCAGCGGCGTGCCCGGCAAGAAGTAAACTGCAGCCCCCC
aactaaa putative branch site (score: 2)
tccttgc putative PPT
aaaactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccggccagttagaacaactctgacagggggctaccacattacaccttacacacgcaacaaaactaaatcgccccgctaccaatccttgcaacccccagGTGACGATGTGGAAGGGCGACATTCGCGACTATAAGGCGCTGCTGGCCAAGAAGATGGGCCTCAGCGGCGTGCCCGGCAAGAAGTAAACTGCAGCCCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - tctgaca
- - - - - - - - - - - - - - - - -taccaca
- - - - - - - - - - - - - - - - - - - - ttacacc
- - - - - - - - - - - - - - - - - - - - - - - - -acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caacaaa