Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACGGCCTCGATGCCGCATGCCGACTCCACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctccgagctccagctttttattgccaccgccgccgtcctgtcttggatgaggcaacccccgtgatgtttgccttgctttcggagttggcttgtgacgacccattccgcgctacccgcgcccacacacgcccccgccctgcgttcccctgcctccctcgacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98590
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10786569|gb|AV643241.1|AV643241
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|10787237|gb|AV643909.1|AV643909
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|10787502|gb|AV644174.1|AV644174
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|49470170|gb|BP098031.1|BP098031
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|6549661|gb|AV395445.1|AV395445
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|6549501|gb|AV395285.1|AV395285
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|49469957|gb|BP097818.1|BP097818
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|10787657|gb|AV644329.1|AV644329
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
EST: gi|10787668|gb|AV644340.1|AV644340
EST:     ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAG                         CTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT
genomic: ACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctc ... ccctcgacagCTCCCGCACCGTGACCGGCGTGCTGAGCTCGCGGCCCACCGCACGCGACAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCACGGCCTCGATGCCGCATGCCGACTCCACTGCCTCTCTGGCGTCCAAGGGCGGCCCCGTCGAGGATGACGCCTTCAGgtaagagctccgagctccagctttttattgccaccgccgccgtcctgtcttggatgaggcaacccccgtgatgtttgccttgctttcggagttggcttgtgacgacccattccgcgctacccgcgcccacacacgcccccgccctgcgttcccctgcctccctcgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG