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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCACGCTGCTCAAGCTGATGACCGGCGACCTGACGCCCTCGGTCGGCACCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCGgtgcgtgcctgacttcagaattgtgtgtgattggacagctgcatcacacacagcagccgtgctttgctgcctagctcttctgacaatgtgtgctttcagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98590
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49462925|gb|BP090838.1|BP090838
EST:     CCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCG                         GTGGACCAGCTGGACGAGGAGAAGACTGTGCTGGAGTTCTTCAAGTCCATG
genomic: CCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCGgtgcgtgcct ... acgcccacagGTGGACCAGCTGGACGAGGAGAAGACTGTGCTGGAGTTCTTCAAGTCCATG
EST: gi|49460837|gb|BP088750.1|BP088750
EST:     CCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCG                         GTGGACCAGCTGGACGAGGAGAAGACTGTGCTGGAGTTCTTCAAGTCCATG
genomic: CCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCGgtgcgtgcct ... acgcccacagGTGGACCAGCTGGACGAGGAGAAGACTGTGCTGGAGTTCTTCAAGTCCATG
EST: gi|15692896|gb|BI717201.1|BI717201
EST:     CCGTGACCCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCG                         GTGGACCAGCTGGACGAGGAGAAGACGGTGCTGGAGTTCTTCAAGTCCATG
genomic: CCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCGgtgcgtgcct ... acgcccacagGTGGACCAGCTGGACGAGGAGAAGACTGTGCTGGAGTTCTTCAAGTCCATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCACGCTGCTCAAGCTGATGACCGGCGACCTGACGCCCTCGGTCGGCACCGTGACGCGCCACCCCCACCTGTCCATCGGCCGCTACCACCAGCACTCGgtgcgtgcctgacttcagaattgtgtgtgattggacagctgcatcacacacagcagccgtgctttgctgcctagctcttctgacaatgtgtgctttcagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgctt