1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcgtggtcgcagcggctcgtctgggctctctcatgtcccgccacccgcttcctgccacccgcaaatccctgactgctgcctcctgtactgtcccctgcagGTGTGTGCGCTGTCGTACGACCGGGACAAGGCCACACTGCTGGCGCCGCAGATTGAGGCGGCGGCGGCCAAGGCGGGGCTCTCCACGTCCACAGCAGCGC
species | Chlamydomonas reinhardtii |
transcript | EDO98203 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGC AEST: gi|14242214|gb|BG861030.1|BG861030
genomic: GTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGCaggtaggggc ... tcccctgcag-
EST: GTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGC AEST: gi|14242214|gb|BG861030.1|BG861030
genomic: GTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGCaggtaggggc ... tcccctgcag-
EST: GTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGC A
genomic: GTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGCaggtaggggc ... tcccctgcag-
cgcttcctgccacccgcaaatccctgactgctgcctcctgtactgtcccctgcagGTGTGTGCGCTGTCGTACGACCGGGACAAGGCCACACTGCTGGCGCCGCAGATTGAGGCGGCGGCGGCCAAGGCGGGGCTCTCCACGTCCACAGCAGCGC
ccctgac putative branch site (score: 3)
ctgtcccct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgtggtcgcagcggctcgtctgggctctctcatgtcccgccacccgcttcctgccacccgcaaatccctgactgctgcctcctgtactgtcccctgcagGTGTGTGCGCTGTCGTACGACCGGGACAAGGCCACACTGCTGGCGCCGCAGATTGAGGCGGCGGCGGCCAAGGCGGGGCTCTCCACGTCCACAGCAGCGC
- - - - - - - - - - - - - tctctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acccgca