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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcctggtgccgccacgaaaaccttcctgaaaggtcgtcccacgtcgtgacgtgctcccttccctgcccacctcgtgcgccccaccccaaccctccagcagGCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGC

Basic information

species Chlamydomonas reinhardtii
transcript EDO98203
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369834|gb|BI529260.1|BI529260
EST:     CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACG                         GCGCCCNCGGGCTGGGCCCCATATCAGTGCGCAAG
genomic: CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACGgtgagcggcc ... cctccagcagGCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAG
EST: gi|14242215|gb|BG861031.1|BG861031
EST:     CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACG                         GCGCCCNCGGGGCTGG-CCCCATATCAGTGCGCAAGGAGATAGTGGTGTTC
genomic: CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACGgtgagcggcc ... cctccagcagGCGCCCCCGGG-CTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTC
EST: gi|14227477|gb|BG846293.1|BG846293
EST:     CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACG                         GCGCCCCCGGGCTGGGGCCCATATC
genomic: CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACGgtgagcggcc ... cctccagcagGCGCCCCCGGGCTGGGCCCCATATC
EST: gi|14242214|gb|BG861030.1|BG861030
EST:     CACGCAAATGTGTGCCCACCTGCGCACGTGAAGAAGACG                         GCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCA
genomic: CACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACGgtgagcggcc ... cctccagcagGCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCA
EST: gi|14237898|gb|BG856714.1|BG856714
EST:     CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACG                         GCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCA
genomic: CGAGGGCTGCACACGCAAATGTGTGCCCACCTGCGCACGTGGAGGAGACGgtgagcggcc ... cctccagcagGCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgacgtgctcccttccctgcccacctcgtgcgccccaccccaaccctccagcagGCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGC
                                            ccctcc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcctggtgccgccacgaaaaccttcctgaaaggtcgtcccacgtcgtgacgtgctcccttccctgcccacctcgtgcgccccaccccaaccctccagcagGCGCCCCCGGGCTGGGCCCCATATCAGTGCGCAAGGAGATAGTGGTGTTCAAGGAGGGCTTCAGGTCGCGGCAGTACTGCCTGAGCGAGTGCGCGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - -acgaaaa
- - - - - - - - - - - - - - - - - -gtcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accccaa