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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCAACAACAACGCACCAGAGAGGCAATGTGTGGCAGCGGTGGCAGCCCATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgagaggggcctcagttataggtgcgccagcagcgccctaatagctaccagctcctccggaggccgcacacgcatcatgcgcacaccggaaccg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98203
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9458904|gb|BE452583.1|BE452583
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
EST: gi|15369834|gb|BI529260.1|BI529260
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
EST: gi|14242215|gb|BG861031.1|BG861031
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
EST: gi|15371408|gb|BI530834.1|BI530834
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGG
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGG
EST: gi|14227477|gb|BG846293.1|BG846293
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
EST: gi|10126020|gb|BE724724.1|BE724724
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
EST: gi|14237898|gb|BG856714.1|BG856714
EST:     CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAG                         CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC
genomic: CATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgag ... ctgtgcccagCTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGCAACAACAACGCACCAGAGAGGCAATGTGTGGCAGCGGTGGCAGCCCATGGCGCCATGCGATGTCGCTAGCTGTTGCAGGGGGACTAAGTCTACAGgtaggctgagaggggcctcagttataggtgcgccagcagcgccctaatagctaccagctcctccggaggccgcacacgcatcatgcgcacaccggaaccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacgca