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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctcgcgcccggccctcgcccgcgccggccctcgcccgctcacagcttacgaacacttgtcacactcataatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCGGCAGTTCGTTGCGGCGCGCCATCGACCGGTAGTGTGCAACAACAACGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDO98203
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9458904|gb|BE452583.1|BE452583
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
EST: gi|15369834|gb|BI529260.1|BI529260
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
EST: gi|14242215|gb|BG861031.1|BG861031
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
EST: gi|15371408|gb|BI530834.1|BI530834
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
EST: gi|14227477|gb|BG846293.1|BG846293
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
EST: gi|10126020|gb|BE724724.1|BE724724
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
EST: gi|14237898|gb|BG856714.1|BG856714
EST:     AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAG                         GGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG
genomic: AGCAGCTGGTGAGCGCGATCGGTGCCCAAGCTCGCTGCCTCTCTCTTCAGgttggctcgc ... aatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccggccctcgcccgctcacagcttacgaacacttgtcacactcataatgccgcagGGAATCGATAGTCGAAGGGCGCGGGGAGCGCGGTCTCGTGTTGCCGTTGCGGCAGTTCGTTGCGGCGCGCCATCGACCGGTAGTGTGCAACAACAACGCA
                   agcttac  putative branch site (score: 3)
                                         tcataat  TA-rich tract