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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcggggtagggcatgtgcagacactatgaggggaggggggattccggggtcgccagccccggggtgagggtgctactgtagaccgtgagcagg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98203
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9458904|gb|BE452583.1|BE452583
EST:     GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGG                         GCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
genomic: GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcg ... ggctatgcagGCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
EST: gi|15369834|gb|BI529260.1|BI529260
EST:     GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGG                         GCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
genomic: GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcg ... ggctatgcagGCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
EST: gi|14242215|gb|BG861031.1|BG861031
EST:     GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGG                         GCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
genomic: GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcg ... ggctatgcagGCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
EST: gi|14227477|gb|BG846293.1|BG846293
EST:     GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGG                         GCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
genomic: GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcg ... ggctatgcagGCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
EST: gi|10126020|gb|BE724724.1|BE724724
EST:     GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGG                         GCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
genomic: GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcg ... ggctatgcagGCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
EST: gi|14237898|gb|BG856714.1|BG856714
EST:     GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGG                         GCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA
genomic: GCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcg ... ggctatgcagGCGAGGTCAAGGACGTGCCGCTGAGCAGTGTTGTCAGCGGGCCCAAGAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTGCTGGCGCCCGCCTCCCTGGCGGTATTGGCGCCCTCGCAGCCCGACATCGACACCTTTGAGAACGTGCCCACCCAGCTCAGCGCGCAGGgtgcgtagcggggtagggcatgtgcagacactatgaggggaggggggattccggggtcgccagccccggggtgagggtgctactgtagaccgtgagcagg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagggt