1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagccagtttcagcattgtttcgcggcatgcgaacaagtgttcgcatagtcccgaagcagcttggtaccaaacgtgccggactaccgtatgttggctaccgtgcgtcggaagtgcgctttgcgtgggcgccctgactcactcttcgctccccatgctcgcttgatgggtgcccgtttccctcttcctaccgcgcagGCGCAAGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCTCAAACAACTCGACTCCAACTTCCTCTAGCAGCATTCTGAGCAGGACAAGA
species | Chlamydomonas reinhardtii |
transcript | EDO97912 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGCAACCCGGCG GGGCAAGACCCGCAGTACAAGCGCAAGTTGACGAACATGTTGCCCAAGCTCEST: gi|23361736|gb|BU649556.1|BU649556
genomic: AGGCAACCCGGCGgtgagccagt ... taccgcgcagGCGCAAGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCTC
EST: ACCCAGTGCGGCACAGCCTCACCTGCATCTACCTAGAAGGCAACCCGGCG GCGCAAGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCTCEST: gi|49459589|gb|BP087502.1|BP087502
genomic: ACCCAGTGCGGCACAGCCTCACCTGCATCTACCTAGAAGGCAACCCGGCGgtgagccagt ... taccgcgcagGCGCAAGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCTC
EST: ACCCAGTGCGGCACAGCCTCACCTGCATCTACCTAGAAGGCAACCCGGCG GCGCAATGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCT
genomic: ACCCAGTGCGGCACAGCCTCACCTGCATCTACCTAGAAGGCAACCCGGCGgtgagccagt ... taccgcgcagGCGCAA-GACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCT
cttcgctccccatgctcgcttgatgggtgcccgtttccctcttcctaccgcgcagGCGCAAGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCTCAAACAACTCGACTCCAACTTCCTCTAGCAGCATTCTGAGCAGGACAAGA
gcttgat putative branch site (score: 5)
tgcccgtttccctctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagccagtttcagcattgtttcgcggcatgcgaacaagtgttcgcatagtcccgaagcagcttggtaccaaacgtgccggactaccgtatgttggctaccgtgcgtcggaagtgcgctttgcgtgggcgccctgactcactcttcgctccccatgctcgcttgatgggtgcccgtttccctcttcctaccgcgcagGCGCAAGACCCGCAGTACAAGCGCAAGCTGACGAACATGCTGCCCAAGCTCAAACAACTCGACTCCAACTTCCTCTAGCAGCATTCTGAGCAGGACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG