1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCCTCAGCACCAGCTGTGCAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcgcgtgggggcgggggaaagggcgggaaggggctggaacgctggcgtggcgcggcgagtgcaggcaggcactcccgtgccggcacagcccaa...
species | Chlamydomonas reinhardtii |
transcript | EDO97912 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTG ATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACEST: gi|14239551|gb|BG858367.1|BG858367
genomic: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcg ... tgagtcacagATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
EST: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTG ATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACEST: gi|14228754|gb|BG847570.1|BG847570
genomic: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcg ... tgagtcacagATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
EST: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTG ATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACEST: gi|22061741|gb|BQ814430.1|BQ814430
genomic: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcg ... tgagtcacagATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
EST: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTG ATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACEST: gi|10789051|gb|AV626771.1|AV626771
genomic: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcg ... tgagtcacagATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
EST: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTG ATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTACEST: gi|14242045|gb|BG860861.1|BG860861
genomic: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcg ... tgagtcacagATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
EST: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTG ATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
genomic: CAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcg ... tgagtcacagATTCCATCGCTCAAGGGTTTCACGGAGCTGCGACGACTTGAGTGCTCCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCCGCCAGAACCTCATCGCAAATGCGTCCGCCCTCAGCACCAGCTGTGCAAAAGGCGCCATGGAGGACCTGGAGCTGCGGGACAACCACCTTTCGGTGgtgggttgcgcgtgggggcgggggaaagggcgggaaggggctggaacgctggcgtggcgcggcgagtgcaggcaggcactcccgtgccggcacagcccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgcgt