1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgagtccttttcttattacctatggggcagggcactaccactaattgcgccatgcacacggctgccccaacgcccctcccaaccgcgtgcacggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGCATCGCAAAGGTCGACGGCCTGGCCACACTCACCAATCTGCGCCGCATCT
species | Chlamydomonas reinhardtii |
transcript | EDO97912 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAG AACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGCEST: gi|14239551|gb|BG858367.1|BG858367
genomic: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAGgtgggtgggg ... acggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGC
EST: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAG AACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGCEST: gi|14228754|gb|BG847570.1|BG847570
genomic: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAGgtgggtgggg ... acggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGC
EST: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAG AACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGCEST: gi|22061741|gb|BQ814430.1|BQ814430
genomic: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAGgtgggtgggg ... acggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGC
EST: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAG AACATCGAGACGCTCACGGNGCTGCGCGAGCTGTGGCEST: gi|14242045|gb|BG860861.1|BG860861
genomic: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAGgtgggtgggg ... acggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGC
EST: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAG AACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGC
genomic: GCGCCCTAACTCTGTTGGAGCTGGGCAGCAACCGCATCCGGGCCATAGAGgtgggtgggg ... acggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgagtccttttcttattacctatggggcagggcactaccactaattgcgccatgcacacggctgccccaacgcccctcccaaccgcgtgcacggccgcagAACATCGAGACGCTCACGGGGCTGCGCGAGCTGTGGCTGGGCCGCAACCGCATCGCAAAGGTCGACGGCCTGGCCACACTCACCAATCTGCGCCGCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - cactaat
- - - - - - - - - - - - - - - - - - - - - - - - - -atgcaca